Phylomap of Strongylocentrotus purpuratus WHL22 — Strongylocentrotus_purpuratus

Gene ages inferred using GenEra on reference transcript sequences from WHL22 assembly (https://www.ncbi.nlm.nih.gov/nuccore/1583097974). Transdecoder -m 50 was performed to obtain protein sequences. Note: DIAMOND was run using the sensitive mode.

Usage

Strongylocentrotus_purpuratus_WHL22.PhyloMap

Format

A tibble with 35,907 rows and 2 variables:

Phylostratum: dbl Phylostratum (or gene age) assignment
GeneID: transcriptID annotation from WHL22 assembly + Transdecoder

Source

Kalábová (2024) Unpublished https://github.com/LotharukpongJS/phylomapr