Phylomap of Schmidtea polychroa Spol_transcriptome_v1 — Schmidtea

Gene ages inferred using GenEra on reference transcript sequences from Spol_transcriptome_v1 assembly (https://www.ncbi.nlm.nih.gov/nuccore?linkname=bioproject_nuccore_transcript&from_uid=271420). Transdecoder -m 50 was performed to obtain protein sequences. Note: DIAMOND was run using the sensitive mode.

Usage

Schmidtea_polychroa.PhyloMap

Format

A tibble with 18,165 rows and 2 variables:

Phylostratum: dbl Phylostratum (or gene age) assignment
GeneID: transcriptID annotation from Spol_transcriptome_v1 assembly + Transdecoder

Source

Kalábová (2024) Unpublished https://github.com/LotharukpongJS/phylomapr