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Gene ages inferred using GenEra on reference transcript sequences from Hduj_transcriptome_v1 assembly (https://www.ncbi.nlm.nih.gov/nuccore?linkname=bioproject_nuccore_transcript&from_uid=271450). Transdecoder -m 50 was performed to obtain protein sequences. Note: DIAMOND was run using the sensitive mode.

Usage

Hypsibius_dujardini.PhyloMap

Format

A tibble with 16,747 rows and 2 variables:

Phylostratum

dbl Phylostratum (or gene age) assignment

GeneID

transcriptID annotation from Hduj_transcriptome_v1 assembly + Transdecoder

Source

Kalábová (2024) Unpublished https://github.com/LotharukpongJS/phylomapr